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rhiF [2018-05-04 12:02:40]
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rhiF [2018-05-04 12:02:40]

ABC transporter (membrane protein) for rhamnose oligosaccharides
locus
BSU06980
pI
9.47
mw
34.46 kDa
protein length
309 aa Sequence Blast
gene length
927 bp Sequence Blast
function
uptake of rhamnose oligosaccharides
product
rhamnose oligosaccharide ABC transporter
essential
no
synonyms
yesP
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    762,942 → 763,871

    The protein

    Protein family

  • ABC transmembrane type-1 domain (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|A96A83684E1E6E8705265D3932DA60FF47C23E3B|rhiL]-[gene|2DC415DCC2ECC3B46526108638DDB46C28832041|rhiF]-[gene|0B11FACEB5E96D166AC1EA0E32C68FCDAF8327E4|rhiG]-[gene|8EED04FCE6E2900B729178209FB281F5463B2540|rhiN]
    description
    [Pubmed|33122638]

    regulation

  • induced in colonies growing on steamed soybeans [Pubmed|33122638]
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    Biological materials

    Mutant

  • MGNA-A948 (yesP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/948 NBRP B. subtilis, Japan]
  • BKE06980 (Δ[gene|2DC415DCC2ECC3B46526108638DDB46C28832041|rhiF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06980 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCGTCAGCCCCATTTC, downstream forward: _UP4_TACGAGTCAAAGGAGGAATG
  • BKK06980 (Δ[gene|2DC415DCC2ECC3B46526108638DDB46C28832041|rhiF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06980 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCGTCAGCCCCATTTC, downstream forward: _UP4_TACGAGTCAAAGGAGGAATG

    • References

  • 10092453,17449691,24391637